The Inquiry Process, The Example:  Analysis of Grooming Behavior in  Drosophila melanogaster

 

The Inquiry Process: The Example

Overview:    Animal Behavior

Animal behavior can be studied at several levels of analysis (Lehner, 1996, Hinde 1970).  The most fundamental objective must be the initial description and cataloging of the behaviors (making an ethogram).  Once a well defined ethogram has been established, quantitative and statistical techniques can be used to analyze the temporal sequences and frequency distribution of the behaviors.  Finally, the scientific method can be used to manipulate experimental variables to produce an understanding of the mechanisms controlling the expression of the behavior.

In this experiment the grooming behavior of the fly Drosophila melanogaster will be studied at three levels of analysis.  First, an ethogram of the behavior will be constructed through direct observation of the flies.  Second, statistical analysis including Markov Chain Analysis and Chi Square testing will be used to characterize the temporal sequences and patterning of  grooming behavior.  Finally, the use of surgical and genetic manipulations will be used to test a hypothesis concerning central nervous system control of this behavior.

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Step One:  How do Drosophila Groom?

The grooming behavior of insects, including flies, has been studied by several authors (refs).  Grooming in these insects is a stereotypic behavior characterized by a predictable sequence of behaviors which often occur in cyclical bouts (ref).  Several authors have suggested that the patterns in stereotypic behavior such as grooming are strongly controlled by the nervous system.  External stimuli may initiate, terminate, or influence the intensity of the behavior, but not the overall patterns of the behavior (refs).  Therefore only experimental manipulations which effect the nervous system will alter the patterns and sequences of the behavior.

In this experiment, the grooming behavior of Drosophila melanogaster will be studied.  Comparisons will be made among three groups.  The groups will include normal wild type flies, normal wild type flies with their wings removed, and wingless flies with the mutation "vestigial wings".  The hypothesis is the patterns of grooming behavior will not be altered by removal of the wings since the neurons of the central nervous system controlling grooming remain intact.  An additional hypothesis is the patterns of grooming behavior will be altered by the vestigial mutation due to developmental consequences of this mutation.

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Step Two:  Build an Ethogram.

This example uses the fruit fly Drosophila melanogaster.  This species is easy to obtain and care for.  Its wide spread use in genetic studies opens the possibility of using various mutant strains in behavior experiments.  Materials need to maintain stocks of Drosophila are readily available from biological supply companies.  When using an animal as small as Drosophila, some consideration of the equipment needed for observing  the specimen and recording data.  In this case the authors used dissecting microscopes to observe the flies in small closed containers.  Data was recorded by the observer with a audio tape recorder as the fly groomed.  The behavior was also recorded using a VCR connected to the microscope via a "flex cam".

Simply finding the best methods for observing and recording the animal's behavior can be a valuable experience for the students.  Each species will present its own particular responses to handling.  In the case of Drosophila, the flies responded best when kept in containers which were at least a centimeter in diameter.  Flies in smaller containers spent most of their time attempting to escape.  Eliciting grooming behavior was also found to be enhanced when ether was used to disable the flies during handling.
 
At total of fifteen different grooming behaviors were observed.  Although these are presented as separate and distinct behaviors, there are instances where the fly appears to be producing intermediate forms of the behavior.  The process of deciding what behaviors constitute grooming and distinguishing among these various behaviors is an important lesson for students.  Producing consistent and reliable descriptions of behavior requires careful observation and discussion among the participating students. See Dawkins, 1976, and Armstrong, 1985 for similar studies.

Grooming Behavior Ethogram of Drosophila melanogaster
 
 
  
Fly Grooming Front Legs and Head. 
 
 
Fly Grooming Abdomen, Wings, and Rear Legs. 
 
  
Wingless Fly Showing Grooming Behavior of the Missing Wings. 
 
Click on the images above to view a short movie of the grooming fly.  Warning! These are large files and may take some time to download

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Step Three: Transition Matrix and Markov Chains.

Once the ethogram was constructed, additional observations were taken to record the sequence in which these behaviors followed one an other.  A typical sequence for a normal wild type Drosophila is given below.  This is not a complete sequence.  A complete sequence can include several hundred observations if the fly is grooming intently.

F-H-F-H-F-H-F-H-F-H-F-H-F-H-(stop)F-H-F-(stop)-F-T-FR-F-(stop)-F-H-F-H-R-A-R-A-UL-R-UL-R-UL-R-UL-R-
UL-R-UL-R-UL-R-UL-R-OL-R-A-R--UL-R-UL-R-------
 
Sequences of data were recorded for two normal wild type flies.  A transition matrix was constructed for both using the following procedure.  The example given below is a matrix for the two normal flies combined.  This was done because the matrix for both flies were very similar, and pooling data improves the quality of the statistical analysis done later.
 

 
Transition Matrix for Two Normal Wild Type Drosophila
Preceding Behaviors
. F H T FR FL OR OL OB UR UL UB RR RL A R totals
F . 338 10 4 3 . 2 . . 1 . 1 . 1 4 364
H 340 . 8 5 . . . . . . . . . . 2 355
T 11 6 . . . . . . . . . . . . 2 19
FR . . 1 . . . . . . . . 1 . . 1 3
FL . 1 . . . . . . . . . . . . . 1
OR . . . . . . 12 4 . 4 2 . . 2 6 30
OL . . . . . 13 . 9 2 4 . . 1 3 3 35
OB . . . . . 2 2 . 2 3 5 . . 1 7 22
UR . . . . . 2 . . . 1 . 1 . 2 9 15
UL . . . . . 1 7 . . . . . 1 34 71 114
UB . . . . . 2 2 3 . 1 . 1 . 3 2 14
RR . 1 . . . 1 1 . . 1 1 . . 1 2 8
RL . . . . . . . . . . . 1 . . 7 8
A 1 . . . . 3 3 . . 9 . 1 2 . 86 105
R 3 2 . . . 4 . 6 12 89 7 2 4 99 . 228
totals 355 348 19 9 3 28 29 22 16 113 15 8 8 146 202 1321
 
Several things can be observed directly from this table. A Chi-Square can be used to test this table.  A significant P value for the Chi-Square of a cell means the transition from the preceding behavior to the following behavior occurred with a greater or smaller frequency than would be expected if the transitions were occurring at random.  The large number of empty cells in this table guarantees a significant Chi-Square value for many of the cells and therefore is not particularly useful.  More data would help this problem, but may not be feasible for a school exercise.  A more informative analysis is to break this large table into sub-tables.  The table below condenses the transition matrix into cells which fall into three categories: Grooming using the Front Legs, Grooming the Wings, Grooming using the Rear Legs but not the wings.
Preceding Behaviors
Front Legs Wings Rear Legs Totals
Front Legs obs =727 
exp =(412), X2240

(125)  119
12 
(204)  181
742
Wings
(128)  128
83 
(38.8)  50.3
147 
(63.4)  110
230
Rear Legs
(194)  180
137 
(58.9)  103
205 
(96.2)  123
349
Totals 734 223 364 1321
The expected values in the Chi-Square table are calculated by multiplying the corresponding row and column totals for each cell and dividing by the grand total.  The expected values are in parentheses in the table above.  The Chi-Square for each cell is calculated by the standard formula (observed value-expected value)2/(expected value).  If the Chi-Square is greater than the value listed in a Chi-Square table with two degrees for freedom (number of behaviors minus 1) at the 0.05 level, then the transition in the cell is significantly greater or less than would be expected if the behaviors are randomly sequenced.  In the table above the Chi-Square must be greater than 5.99 to be significant. The Chi-Square values are in blue in the table above.

The transition matrix table above shows that all of the cells have a significant Chi-Square value.  Closer examination reveals that the Front Legs transition to Front Legs much more than expected and much less to the Wings or Rear Legs than expected.  The Wings transition significantly more than expected to Wings and Rear Legs, and significantly less to Front Legs.  Similarly, the Rear Legs have significantly high transitions to Rear Legs and Wings, but a significantly reduced transition to Front Legs.

In other words, when a fly is grooming the front part of its body, it tends to alternate among the various behaviors associated with the front of the animal (F, H, T, FL, FR) and avoids shifting grooming to the wings or rear part of the body.  Grooming of the remaining parts of the body is more complex.  When grooming the wings, the fly will tend to continue grooming the wings or it will shift to the rear elements.  In the same way, when grooming the rear elements, the fly will tend to continue grooming the rear or shift to the wings.

If a Chi-Square analysis is made over the entire transition matrix the following patterns emerge:

It was also observed that when a fly started grooming, it usually began by grooming the front part of the body before moving its attention to the rear body parts.

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Step Four: Effects of Wing Removal and Vestigial Mutant

 There are several experimental approaches that can be used with Drosophila.  Students familiar with this animal from their study of genetics may suggest mutants which have altered body parts involved in grooming (Vestigial wing, Apterous wing, Antennapedia).  Two experimental manipulations were done in this exercise.  The first was to remove the wings from normal wild type flies and observe the effect on grooming behavior.  The hypothesis was the grooming behavior would not change since the nervous system controlling the behavior was still intact.

The results of the removing wings supported the hypothesis.  These flies showed a transition matrix very similar to normal flies.  The behaviors associated with grooming the wings (FR, FL, RR, and RL) were still present.  The quantity of data was too small to make efficient use of the Chi-Square analysis and therefore a statistical analysis is not included with these results.

The second experiment used flies with the mutation Vestigial wings.  These flies have a very small non-functional wing.  The hypothesis was the behaviors associated with grooming the wings would be absent due to possible developmental effects on the nervous system controlling the behavior.  Unfortunately the behavior of these flies was dramatically different from the wild type flies.  They appeared to be in a state of hyper-activity and showed very little grooming behavior.  Some isolated wing grooming behaviors may have been observed, but they were so infrequent reliable conclusions could not be made.

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Step Five: Beyond Grooming in Drosophila

There are many different avenues which can be explored as alternatives or extensions to this exercise.  A few are listed here.
 
Using Drosophila:

 
 Using other Insects and Arthropods: Using Vertebrates: Using Humans: Other Behaviors:

Grooming behavior is only one of several interesting behavior that can be studied with Drosophila, other arthropods,        vertebrates, and humans.  Feeding and drinking behavior, general circadian activity, and reproductive behaviors will be among those students will be interested in discussing.  The analysis tools used in this experiment can be used to study social behaviors as well.  Rather than recording preceding and following behaviors, record the behavior of one animal and the response of a second animal.

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 Step Six:  Putting it All Together
Students can be assessed during project by the following methods. Top of Page
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